References
Amann, R., Fuchs, BM., Behrens, S. (2001) The identification of microorganisms by fluorescence in situ hybridisation. Curr. Op. Microbiol. 12: 231-236.
Antal, T., Krendeleva,
T., Laurinavichene, T., Makarova, V., Ghirardi, M., Rubin, A.,
Tsygankov, A., Seibert, M. (2003) The dependence of algal H2
production on photosystem II and O2 consumption activities in
sulfur-deprived Chlamydomonas renhardtii cells. BBA-Bioenergetics
1607 : 153-160
Bathe, S., Hausner, M.
(2006) Design and evaluation of 16S rRNA sequence based
oligonucleotide probes for the detection and quantification of
Comamonas testosteroni in mixed microbial communities. BMC
Microbiology 6:54
Bernard, L., Desplats,
C., Mus. F., Culne, S., Cournac, L., Peltier, G. (2006)
Agrobacterium tumefaciens type II NADH dehydrogenase –
Characterization and interactions with bacterial and thylakoid
membranes. FEBS J. 273: 3625-3637
Bockris, J. (2002) The
origin of ideas on a hydrogen economy and its solution to the decay
of the environment. Int J Hydrogen Energy 27: 731–740.
Burrell, .PC.,
O’Sullivan, C., Song, H., Clarke, W.P., Blackall, L.L. (2004)
Identification, detection and spatial resolution of Clostridium
populations responsible for cellulose degradation in a methanogenic
landfill leachate bioreactor. Appl. Env. Microbiol. 70: 2414-2419.
Cardol, P.,
Gonzalez-Halphen, D., Reyes-Prieto, A., Baurain, D., Matagne, R.F.,
Remacle, C. (2005) The mitochondrial oxidative phosphorylation
proteome of Chlamydomonas reinhardtii deduced from the genome
sequencing project. Plant Physiol. 137: 457-459
Cardol, P., Lapaille,
M., Minet, P., Franck, F., Matagne, R.F., Remacle, C. (2006) ND3 and
ND4L subunits of mitochondrial complex I, both nucleus encoded in
Chlamydomonas reinhardtii, are required for the activity and
assembly of the enzyme. Eukaryotic Cell 5: 1460-1467
Cardol, P., Gloire, G.,
Havaux, M., Remacle, C., Matagne, R., Franck, F. (2003)
Photosynthesis and state transitions in mitochondrial mutants of
Chlamydomonas reinhardtii affected in respiration. Plant Physiol.
133 : 2010-2020
Chang, F.-Y.,Lin, C.-Y.
(2004) Biohydrogen production using an up-flow anaerobic sludge
blanket reactor. International Journal of Hydrogen Energy 29 : 33-39
Chang, J.-S., Lee,
K.-S.,Lin, P.-J. (2002) Biohydrogen production with fixed-bed
bioreactors. International Journal of Hydrogen Energy 27 : 1167-1174
Chen, C., Gibbs, M.
(1991) Glucose respiration in the intact chloroplast of
Chlamydomonas reinhardtii. Plant Physiol. 95: 82-87
Chin, H.L., Chen, Z.S.,
Chou, C.P. (2003) Fedbatch operation using Clostridium
acetobutylicum suspension culture as biocatalyst for enhancing H2
production, Biotechnol. Prog. , pp. 383–388
Collins, G., Kavanagh,
S., McHugh, S., Connaughton, S., Kearney, A., Rice, O., Carrigg, C.,
Scully, C., Bhreathnach, N., Mahony, T., Madden, P., Enright, MA.,
O’Flaherty, V. (2006) Accessing the Black Box of microbial diversity
and ecophysiology: recent advances through polyphasic experiments.
J. Env. Sc. Health A 41 :897-922
Cournac, L., Mus, F.,
Bernard, L., Guedeney, G., Vignais, P., Peltier, G. (2002) Limiting
steps in hydrogen production in Chlamydomonas reinhardtii and
Synechocystis PCC 6803 as analysed by light-induced gas exchange
transients. Int. J. Hydrogen Energy 27: 1229-1237
Cytryn, E., van Rijn,
J., Schramm, A., Gieseke, A., de Beer, D., Minz, D. (2005)
Identification of bacteria potentially responsible for oxic and
anoxic sulfide oxidation in biofilters of a recirculating
mariculture systems. Appl. Env. Microbiol. 71:6134-6141
Das, D.,Veziroglu, T.N.
(2001) Hydrogen production by biological processes: a survey of
literature International Journal of Hydrogen Energy 26 : 13-28
Dunn, S. (2002) Hydrogen
futures: toward a sustainable energy system. Int J Hydrogen Energy
27, pp. 235–264.
Fang, H.H.P.,Liu, H.
(2002) Effect of pH on hydrogen production from glucose by a mixed
culture. Bioresource Technology 82 : 87-93
Fang, H.H.P., Li, C.L.,
Zhang, T. (2006a) Acidophilic hydrogen production from rice slurry.
Int. J. Hydrogen Energy 31: 683-692
Fang, H.H.P., Zhang, T.,
Li, C.L. (2006b) Characterisation of Fe-hydrogenase genes diversity
and hydrogen-producing populations in an acidophilic sludge. J.
Biotech. 126:357-364
Forestier, M., King, P.,
Zhang, L., Posewitz, M., Schwarzer, S., Happe, T., Ghirardi, M.L.,
Seibert, M. (2003) Expression of two [Fe]-hydrogenases in
Chlamydomonas reinhardtii under anaerobic conditions. Eur. J.
Biochem. 270: 2750-2758
Forti, G., Furia, A.,
Bombelli, P., Finazzi, G. (2003) In vivo changes of the
oxidation-reduction state of NADP and of the ATP/ADP cellular ratio
linked to the photosynthetic activity in Chlamydomonas reinhardtii.
Plant Physiol. 132, 1464-1474
Fouchard, S.,
Hemschemeier, A., Caruana, A., Pruvost, J., Legrand, J., Happe, T.,
Peltier, G., Cournac, L. (2005) Autotrophic and mixotrophic hydrogen
photoproduction in sulfur-deprived Chlamydomonas cells. Appl.
Environ. Micobiol. 71: 6199-6205
Fuhrmann, M., Stahlberg,
A., Govorunova, E., Rank, S., Hegemann, P. (2001) The abundant
retinal protein of the Chlamydomonas eye is not the photoreceptor
for phototaxis and photophobic responses. J Cell Science 114:
3857-3863
Gaffron, H., Rubin, J.
(1942) Fermentative and photochemical production of hydrogen in
algae. J Gen Physiol 26: 219-240
Ghirardi, M., Togasaki,
R., Seibert, M. (1997) Oxygen sensitivity of algal H2-production.
Appl Biochem Biotech 63-65 : 141-151
Grady, C.P.L., Daigger
G.T., Lim H.C. (1999) Biological wastewater treatment. Biological
nutrient removal. New York: Marcel Dekker; p. 487
Greenbaum, E. (1980)
Simultaneous photoproduction of hydrogen and oxygen by
photosynthesis. Biotechnol. Bioener. Symp. 10: 1-13
Greenbaum, E. (1988)
Energetic efficiency of hydrogen photoevolution by algal water
splitting. Biophys J 54: 365-368
Hahn, J.J., Chirardi,
M.L., Jacoby, W.A. (2004) Effect of process variables on
photosynthetic algal hydrogen production. Biotechnol. Prog. 20:
989-991
Happe, T., Hemschemeier,
A., Winxler, M., Kaminski, A. (2002) Hydrogenases in green algae: do
they save the alfae’s life and solve our energy problems ? Trends
Plant Sci 7: 246-250
Happe, T., Kaminski, A.
(2002) Differential regulation of the Fe-hydrogenase during
anaerobic adaptation in the green alga Chlamydomonas reinhardtii.
Eur J Biochem 269: 1-11
Happe, T., Mosler, B.,
Naber, J. (1994) Induction, localization and metal content of
hydrogenase in the green alga Chlamydomonas reinhardtii. Eur J
Biochem 222: 709-714
Hemschemeier, A., Happe,
T. (2005) The exceptional photofermentative hydrogen metabolism of
the green alga Chlamydomonas reinhardtii. Biochem. Soc. Trans. 33:
39-41
Hussy, I., Hawkes, F.R.,
Dinsdale, R.,Hawkes, D.L. (2005) Continuous fermentative hydrogen
production from sucrose and sugarbeet. International Journal of
Hydrogen Energy 30 : 471-483
Janse, I., Meima, M.,
Kardinaal, WE., Zwart, G. (2003) High-resolution differentiation of
Cyanobacteria by using rRNA-internal transcribed spacer denaturing
gradient gel electrophoresis. Appl Environ Microbiol. 69: 6634-6643
Kato, S., Haruta, S.,
Cui, Z.J., Ishii, M., Igarashi, Y. (2005) Stable coexistence of five
bacterial strains as a cellulose-degrading community. Appl. Env.
Microbiol. 71: 7099-7106
Kofer, W., Koop, H.U.,
Wanner, G., Steinmüller, K. (1998) Mutagenesis of the genes encoding
subunits A, C, H, I, J and K of the plastid
NAD(P)H-plastoquinone-oxidoreductase in tobacco by polyethylene
glycol-mediated plastome transformation. Mol. Gen. Genet.
258:166-173
Kondatrieva,
E.N.,Gogotov, I.N. (1983) Production of molecular hydrogen in
mircoorganisms Advances in Biochemical Engineering Biotechnology 28
: 139-161
Kruse, O., Rupprecht,
J., Bader, K.P., Thomas-Hall S., Schenk, P.M., Finazzi, G.,
Hankamer, B. (2005) Improved photobiological H2 production in
engineered green algal cells. J. Biol. Chem. 280: 34170-34177
Lay, C., Sutren, M.,
Rochet, V., Saunier, K., Doré, J., Rigottier-Gois, L. (2005) Design
and validation of 16S rRNA probes to enumerate members of the
Clostridium leptum subgroup in human faecal microbiota. Env.
Microbiol. 7: 933-946.
Lay, J.J. (2001)
Biohydrogen generation by mesophilic anaerobic fermentation of
microcrystalline cellulose, Biotechnol. Bioeng. 74, pp. 280–287
Lee, J, Greenbaum, E
(2003) A new oxygen sensitivity and its potential application in
photosynthetic H2 production. Appl Biochem Biotech 106: 303-313
Lee, K.-S. , Y.-S. Lo,
Y-C. Lo, P.-J. Lin, J.S. Chang, (2003) H2 production with anaerobic
sludge using activated-carbon supported packed-bed bioreactors.
Biotechnol. Lett. 25, pp. 133–138
Liu, H., Fang, H.H.P.
(2003) Hydrogen production from wastewater by acidogenic granular
sludge, Water Sci. Technol. 47: 153–158.
Liu, X., Zhu, Y.,Yang,
S.-T. (2006) Butyric acid and hydrogen production by Clostridium
tyrobutyricum ATCC 25755 and mutants. Enzyme and Microbial
Technology 38 : 521-528
Logan, B.E., Oh, S.-E.,
Kim, I.S.,Van Ginkel, S. (2002) Biological hydrogen production
measured in batch anaerobic respirometers. Environmental Science &
Technology 36 : 2530-2535
Loppes, R., Radoux, M.
(2002) Two short regions of the promoter are essential for
activation and repression of the nitrate reductase gene in
Chlamydomonas reinhardtii. Mol Genet Genomics 268: 42-48
Mackay, IM. (2004)
Real-time PCR in the microbiology laboratory. Clin. Microbiol.
Infect. 10: 190-212
Melis, A. (2002) Green alga hydrogen production: progress,
challenges and prospects. Int. J. Hydrogen Energy 27: 1217-1228
Melis, A. (2003)
Maximizing photosynthetic efficiencies and hydrogen production in
microalgal cultures. Hydrogen, Fuel Cells and Infrastructure
Technologies FY 2003 Progress Report, pp. 1-4
Melis, A., Happe, T.
(2001) Hydrogen production. Green algae as a source of energy. Plant
Physiol. 127: 740-748
Melis, A., Melnicki,
M.R. (2006) Integrated hydrogen production. Int. J. Hydrogen Energy
31: 1563-1573
Melis, A., Seibert, M.,
Happe, T. (2004) Genomics of green algal hydrogen research.
Photosynth. Res. 82: 277-288
Melis, A., Zhang, L.,
Forestier, M., Ghirardi, M., Seibert, M. (2000) Sustained hydrogen
gas production upon reversible inactivation of oxygen evolution in
the green alga Chlamydomonas reinhardtii. Plant Physiol. 122:
127-135
Mizuno, O., Dinsdale,
R., Hawkes, F.R., Hawkes, D.L.,Noike, T. (2000) Enhancement of
hydrogen production from glucose by nitrogen gas sparging.
Bioresource Technology 73: 59-65
Mus, F., Cournac, L.,
Cardetteni, V., Caruana, A., Peltier, G. (2005) Inhibitor studies on
non-photochemical plastoquinone reduction and H2 photoproduction in
Chlamydomonas reinhardtii cells. Biochim. Biophys. Acta 1708:
322-332
Nandi, R.,Sengupta, S.
(1998) Microbial production of hydrogen : an overview. Critical
Reviews in Microbiology 24 : 61-84
Nicolaisen, MH.,
Ramsing, NB. (2002) Denaturing gradient gel electrophoresis (DGGE)
approaches to study the diversity of ammonia-oxidizing bacteria. J.
Microbiol. Meth. 50: 189-203
Oh, S.E., Iyer, P.,
Bruns, M.A.,Logan, B.E. (2004) Biological hydrogen production using
a membrane bioreactor. Biotechnology And Bioengineering 87 : 119-127
Oh, S.E., Van Ginkel,
S.,Logan, B.E. (2003) The relative effectiveness of pH control and
heat treatment for enhancing biohydrogen gas production.
Environmental Science & Technology 37 : 5186-5190
Oh, Y.K., Kim, S.H.,
Kim, M.-S.,Park, S.U. (2004) Thermophilic biohydrogen production
from glucose with trickling biofilter. Biotechnology And
Bioengineering 88 : 690-698
Palazzi, E., Perego,
P.,Fabiano, B. (2002) Mathematical modelling and optimization of
hydrogen continuous production in a fixed bed bioreactor. Chemical
Engineering Science 57 : 3819-3830
Peixoto, R.S., da Costa
Coutinho, H.L., Rumjanek, N.G., Macrae, A., Rosado, A. (2002) Use of
rpoB and 16S rRNA genes to analyse bacterial diversity of a tropical
soil using PCR and DGGE. Lett. Appl. Microbiol. 35: 316-320
Peltier, G., Cournac, L.
(2002) Chlororespiration. Annu Rev Plant Physiol Plant Mol Biol 53 :
523-550
Peters, J.W. (1999) Structure and mechanism of iron-only
hydrogenases. Curr. Opinion Structur.Biol. 9: 670-676
Rachman, M.A. ,
Nakashimada, Y., Kakizono, T., Nishio, N. (1998) H2 production with
high yield and high evolution rate by self-flocculated cells of
Enterobacter aerogenes in a packed-bed reactor, Appl. Microbiol.
Biotechnol. , pp. 450–454
Remacle, C., Duby, F.,
Cardol, P., Matagne, R.F. (2001) Mutations inactivating
mitochondrial genes in Chlamydomonas reinhardtii. Bioch Soc Trans
29 : 442-445
Rittmann, B.E. (2006)
Microbial ecology to manage processes in environmental
biotechnology. Trends in Biotech. 24: 261-266
Saleh-Lakha, S., Miller,
M., Campbell, RG., Schneider, K., Elahimanesh, P., Hart, M.M.,
Trevors, J.T. (2005) Microbial gene expression in soil: methods,
applications and challenges. J. Microbiol. Meth. 63: 1-19
Scheldeman, P., Baurain,
D., Bouhy, R., Scott, M., Mühling, M., Whitton, B.A., Belay, A.,
Wilmotte, A. (1999) Arthrospira ('Spirulina') strains from four
continents are resolved into only two clusters, based on amplified
ribosomal DNA restriction analysis of the internally transcribed
spacer. FEMS Microbiology Letters 172: 213-222
Schönfeld, C., Wobbe,
L., Borgstädt, R., Kienast, A., Nixon, P.J., Kruse, O. (2004) The
nucleus-encoded protein MOC1 is essential for mitochondrial light
acclimation in Chlamydomonas reinhardtii. J. Biol. Chem. 48:
50366-50374
Spiegelman, D.,
Whissell, G., Greer, C.W. (2005) A survey of the methods for the
characterization of microbial consortia and communities. Can J
Microbiol. 51: 355-86
Stevenson, D.M., Weimer,
P.J. (2005) Expression of 17 genes in Clostridium thermocellum ATCC
27405 during fermentation of cellulose or cellobiose in continuous
culture. Appl. Env. Microbiol. 71: 4672-4678
Stuart, T., Gaffron, H.
(1972) The mechanism of hydrogen photoproduction by several algae.
Planta 106, 91-112
Teplyakov, V.V.,
Gassanova, L.G., Sostina, E.G., Slepova, E.V., Modigell,
M.,Netrusov, A.I. (2002) Lab-scale bioreactor integrated with active
membrane system for hydrogen production: experience and prospects.
International Journal of Hydrogen Energy 27 : 1149-1155
Ueno, Y., Haruta, S.,
Ishii, M.,Igarashi, Y. (2001) Characterization of a microorganism
isolated from the effluent of hydrogen fermentation by microflora.
Journal of Bioscience and Bioengineering 92 : 397-400
Ueno, Y., Haruta, S.,
Ishii, M.,Igarashi, Y. (2001) Microbial community in anaerobic
hydrogen-producing microflora enriched from sludge compost. Applied
Microbiology And Biotechnology 57 : 555-562
Van Dyke, MI., Mc
Carthy, AJ. (2002) Molecular biological detection and
characterisation of Clostridium populations in municipal landfill
sites. Appl. Env. Microbiol. 68 : 2049-2053
Van Ginkel, S., Logan,
B.E. (2005) Increased biological hydrogen production with reduced
organic loading, Water Res. 39: 3819–3826.
Van Ginkel, S., Sung,
S.,Lay, J.J. (2001) Biohydrogen production as a function of pH and
substrate concentration. Environmental Science & Technology 35 :
4726-4730
Verméglio, A., Cournac,
L., Peltier, G., Fonticella-Camps, J.-C., Produire de l’hydrogène à
partir d’eau et de lumière grâce aux microorganismes.
http://www.cea.fr/Fr/Publications/clefs44/sommaire.html
Vilchez, C., Garbayo,
I., Markvicheva, E., Galvan, F., Leon, R. (2001). Studies on the
suitability of alginate-entrapped Chlamydomonas reinhardtii cells
for sustaining nitrate consumption processes. Biores. Technol.
78:55-61
Wollman, F.-A. (2001)
State transitions reveal the dynamics and flexibility of the
photosynthetic apparatus. EMBO J. 20 : 3623-3630
Wu, M. (2006) Trickling
biofilters for hydrogen sulfide odor control. Lantec Products Corp
website www.lantecp.com : 1-7
Wu, S.Y., Lin, C.N.,
Chang, J.S.,Chang, J.S. (2005) Biohydrogen production with anaerobic
sludge immobilized by ethylene-vinyl acetate copolymer.
International Journal of Hydrogen Energy 30 : 1375-1381
Yokoi, H., Maki, R.,
Hirose, J.,Hayashi, S. (2002) Microbial production of hydrogen from
starch-manufacturing wastes. Biomass and Bioenergy 22 : 389-395
Yokoi, H., Maeda, Y.,
Hirose, J., Hayashi, S., Takasaki, Y. (1997) H2 production by
immobilized cells of Clostridium butyricum on porous glass beads
Biotechnol. Tech. 11: 431–433
Zhang, H., Bruns,
M.A.,Logan, B.E. (2006) Biological hydrogen production by
Clostridium acetobutylicum in an unsaturated flow reactor. Water
Research 40 : 728-734
Zhang, L., Happe, T.,
Melis, A. (2002) Biochemical and morphological characterization of
sulfur-deprived and H2-producing Chlamydomonas renhardtii (green
alga). Planta 214: 552-561
Zhongtang, Y. Morrison, M. (2004) Comparisons of different hypervariable regions of rrs genes for use in fingerprinting of microbial communities by PCR-denaturing gradient gel electrophoresis. Appl. Env. Microbiol. 70 : 4800-4806.